Service Center Facilities
Research
Bioinformatics and Computational Research, Microarray Analysis, Homology Modelling, Sequence Analysis
Bioinformatics and Computational Research
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| Date | Name | CS Collaboration | Statistics Collaboration | Description |
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| Rustom Antia, Biology | ||||
| Joel Bowman, Chemistry | ||||
| 01/05 | BimCore | Mentor: J. Lu GS: Ali Pirani |
Susmita Datta | Cluster Validation for Microarray gene Expression Data |
| 01/04 | Scott Devine, Biochemistry | Steve Pittard |
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Transposable elements in the human genome REF |
| Timothy Duong | ||||
| Michael Epstein, Human Genetics | ||||
| Deiter Jaeger, Biology | ||||
| 05/06 | Christian Larsen, Christine Martens | Mentor: J. Lu GS: Lin Liu |
Vicki Hertzberg | PIP: Flow cytometry database and analysis |
| David Lynn, Chemistry | ||||
| Carlos Moreno, Pathology | ||||
| Junmin Peng, Human Genetics | Computational Challenges in Proteomic CLS Abstract | |||
| Astrid Prinz, Biology | ||||
| Leslie Real, Biology | ||||
| James Thomas, Human Genetics | ||||
| Paula Vertino | ||||
| Kurt Warncke, Physics | ||||
| Michael Zwick, Human Genetices | ||||
Microarray Analysis
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| Name | Date | Description | - | |
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| Margo Brinton, Svetlana Schorbic |
06/04 Georgia State |
Transformed cells with and without infection. | Moe 430A | |
| Georgia Chen | 03/04 |
Behaviors of metastatic SCCHN cells - REF
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Hu133A | |
| Marie Csete | 04/04 | Rat230-2 | ||
| Magnus Edlund | 12/05 | CHEDA, Susmita Datta. Prostate cancer and associated lipid levels. | ||
| Mark Feinberg, Sara Klucking |
05/04 | HIV and SIV infections. REF  |
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| Thomas Genetta | 04/05 | Hu133 2.0 | ||
| Edward Lin, Nana Gletsu |
01/03 | Surgery induced gut hormone alterations | Hu133 2.0 | |
| Jorg Goronzy, Ines Colmegna |
10/04, 08/06 | Immune response in the Aged. | ||
| John Hepler, TJ Murphy |
04/04 | Differential effects of Gqa, G14a and G15a on vascular smooth muscle cell survival and gene expression profiles. REF.
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Rat230-2 | |
| Shawn Hochman, Shruti Subramaniam |
10/03 | Spinal cord injuries. | Moe 430A | |
| Sean Kimbro, Tea Okou |
01/05 | Breast cancer. | ||
| Carlos Moreno | Global Promoter Analysis of the Human Genome Identifies Functional Gene Clusters and Transcription Factor Binding Sites CLS Abstract | Hu133A B | ||
| Bali Pulendran, Troy Querec |
08/04, 09/05 | Stimulated or not stimulated DC’s. Microarray. | Hu133A | |
| Bruce Sundstrom | 08/05 | Gene expression in post-partum cardiomyopathy. | Hu133A | |
| KV Thrivikraman | 09/04 | Effects of glucocorticoid on diurnal gene expression profiles in selected rat brain regions. | Rat230-2 | |
Homology Modelling
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| Name | Date/Time | Description | ||
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| Richard Compans, Sheguna Seth | 01/05 | Homology modeling of viral surface glycoprotein. (ser-f). REF.  |
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| Magnus Edlund | 03/06 | Sequence alignments and homology modeling of Nucleolin. | ||
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| Wylie Nichols | 03/05 | Sequence alignments and homology modeling of DNF-2. REF. | ||
| Frank Novembre, Kelly Dennison | 04/06 | Homology modeling of pgm1. | ||
| Charles Parkos, Winston Lee | 06/06 | Homology modeling of SIRPa and SIRPb. Mutational analysis. REF.  |
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| James Ritchie | 10/03, 12/05 | Von Willebrand Factor (A2 domain). ADAMTS 13. | ||
| Jim Thomas, Alaine Keebaugh | 08/06 | Mutational analysis of HPRT1, and amino acid compensation. | ||
| Kurt Warncke, Li Sun | 07/05 | Comparative Model of EutB from Coenzyme B12-Dependent Ethanolamine Ammonia-Lyase REF.  |
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Sequence Analysis
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| Name | Date/Time | Description | ||
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| Guy Benian | 07/07 | Unc96 and Unc98 interact with Paramyosin REF. | ||
| Guy Benian | 09/05 | Unc98 | ||
| Guy Benian | 09/03 | Isoforms of Unc89 containing MLCK-like protein kinase domains. REF.  |
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| David Stephens, Deepa Machiah | 08/06 | How point mutation in TLR4 would effect the binding of MD-2 protein. | ||
| David Stephens, Rhonda Hobb | 04/06 | Sequence analysis of NMB0065. Homology to NeuE. | ||
| James Thomas, Alaine Case | 04/05 | Sequence comparisons of Olfactin. | ||